Scaffold Ga0068511_1001203

Overview

Basic Information

• Taxon OID: 3300005057
• Scaffold ID: Ga0068511_1001203
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2559
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F008624	Metagenome / Metatranscriptome	330	Y
F059056	Metagenome / Metatranscriptome	134	Y
F060971	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_10012031	F060971	N/A	WENWGELTEHHHSHLAHIVQMCTLKRDSQQLDHYAEVFANV*
Ga0068511_10012036	F008624	N/A	MNPQAHRSTDELKAIVKALSKLSLLNTPEEDQRLFECEQELRKRKREQDFIDAHFQVVVYN*
Ga0068511_10012037	F001419	AGGA	MMYEFDGYDEILKCYEGETDIHASTSFEVGLMNDLYYQLFYNYNYDRN*
Ga0068511_10012038	F059056	N/A	MTGIELFIVIGGCYAIYTVGMAIATTIDYHTYNKNEQLVKR*