Scaffold Ga0068511_1000443

Overview

Basic Information

• Taxon OID: 3300005057
• Scaffold ID: Ga0068511_1000443
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3554
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F047360	Metagenome	150	Y
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_100044310	F028349	AGGAG	MKVRTYHKNGKAVQFLGYSDIDAANAAKVVMAEMNDVGYFKPRLGTDECIYDWIYVKEITDEDLKEALGR*
Ga0068511_100044311	F020815	AGGAGG	MRLYMNKQGEWVGTQAEAKKIGATMVDVPTDKPNLLKWLNTFTDKIDEAAQEVIENKPKPGGVTLKAHAWDTIMQCARNASIKDLTMALVVYMDRVHDIADGQKETQQ*
Ga0068511_100044312	F087896	AGGAG	MNYKTKQGAIISDDGYTQVIKQHNLGYGWEATLWNNDRLVITHDATGETLSIPPESTQKLRDIFAAIKKETNNG*
Ga0068511_10004433	F047360	AGGAG	MKFECEINMDNDAFANDQHTIILSKILKKISYEVDEFVCSERTKTVWDISGNRIGSWKITNDR*