Scaffold Ga0068511

Basic Information
Taxon OID	3300005057 Open in IMG/M
Scaffold ID	Ga0068511_1000326 Open in IMG/M
Source Dataset Name	Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005057 Open in IMG/M

Scaffold ID

Ga0068511_1000326 Open in IMG/M

Source Dataset Name

Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3981
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (94.12%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3981

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (94.12%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location Name	East Sea, Korea
Coordinates	Lat. (^o)	37.0	Long. (^o)	131.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

East Sea, Korea

Coordinates

Lat. (^o)

37.0

Long. (^o)

131.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013377	Metagenome	272	N
F021206	Metagenome	220	Y
F047360	Metagenome	150	Y
F049285	Metagenome	147	N
F058518	Metagenome	135	Y
F092867	Metagenome	107	N
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_10003261	F092867	N/A	LAYRTNKENIVVDLETFKAMSRPEKKEQDFGHCGDCRACWSRDVANISYPLH*
Ga0068511_100032610	F096197	AGG	MTNFTKEQLKTLRAEINSLLLTHNFEETCDLKIQTLVDSCTYRGGEATFKVKVLLDGAETKEEKDLKKMAILARLDTSKVHEYTDHRSVRYRMQLVGYKTKARKMPWIVKDLLSMSGNEYKLTDAQARQWFEYEVQS*
Ga0068511_100032611	F058518	GAGG	MRYKDITVEAEDLECDEIDTIHDAIKKHILDVGIATPKTLTGFNWKLDVRMRMDNYDT*
Ga0068511_100032615	F049285	GGA	MKLIKVRVNKTIEYEVSVPVQEDHLRHLKYYEHIAEYLQTIDWNKEIKVSPQNYKHIAEYYDWLDWEAVQNG*
Ga0068511_10003263	F013377	GGA	MTKKILKHWALFYKNGERHFINAPTRAELDSAVFEGAYAPRFDSVTYYVEYERDIKDTQYNQVHEVYLK*
Ga0068511_10003266	F021206	AGGAGG	MTVTLNQLLEMENVLATRKIPSDIEAVTNWKYFSDSKQKWITLGEQPLHYVLRILTKKDFKIFMKGE*
Ga0068511_10003267	F047360	GGAG	MKFECNIDMSNDAFAHDPHYELSKIIKTISHDVDDFVCISRTKILRDTNGNKIGTWKIIGE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068511_1000326

Overview

Ecosystem & Geography

Associated Families

Sequences