Scaffold Ga0068511_1000029

Overview

Basic Information

• Taxon OID: 3300005057
• Scaffold ID: Ga0068511_1000029
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8872
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019562	Metagenome / Metatranscriptome	229	N
F028183	Metagenome / Metatranscriptome	192	N
F041247	Metagenome / Metatranscriptome	160	N
F061913	Metagenome / Metatranscriptome	131	N
F084452	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_10000293	F028183	AGG	MTPEIRLTSLEETRSAPYCRELKTLWYDREYLLDHLENIDENNWYLFDCGHIRWTVQEAFNARRECKNYPFSEFHYELINLFTPAISFDTVLYTQTAIGGAPPHQDRNRPTALNFAIRGEFSDTSPQVFYDSFDRSTEKYRMTYEKNDITNEFAPWIFKGPEIHGVENKTEKNRIIITCAWRHNSYEDIEKRLLDGTLVNWEQNEKNKRIKFV*
Ga0068511_10000295	F019562	AGG	MWYHKKFKLQYDTNVFNEIIEYAERATWRQGYDQNGLLWNVEELPLNPKQFPILNELYEGLNTEFKRPSFFISNVKPGGLVNHIDHNKWGNLGIPLKGDFEKTPQYFYDQFNHPVESFIVDSPVIFNTRMLHAVPRELTDTGPRWVLMMDLFEWVDKLFDKIDKKTIWTDTKNFKNA*
Ga0068511_10000297	F084452	GGAG	MINKLIWNKVEELFYWNISVDSPIKQLPFTMEFILACQKEFSMKVRDKEYPIRLGGPVDWQDKTMGDFVKEIDEQYQNNYFVAENGTSTTGVVGEIKDVNDKPITNKWNIRGEALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADVICSQADFKPADDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGLLLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVNTLAGHVGLKINKVDYDHCNLYRPPMYRIFTEMTHG*
Ga0068511_10000298	F061913	GGAG	MVEQGNFFVKCHNIYYNQQWLVDVLDSLKPSDWVNGVSRTGVAWTVSECRNIPYEGMWKDIVENINLDTVGSTERTADGQKPWCFFSKLPPGGINLHYDHRRWGAILFPVRGKFELTPQIFATENYTEIERFNFEKSKIHDNGTPVFFDSRVLHAVPTPLDLEEERVVFSVNIHSHPTEMFKKAVDGTWLNKNTENIGVSND*
Ga0068511_10000299	F041247	AGGAG	MTNFYSIQADKIKFNLDMLVDMYNTIDQTKWVHRQDKLPQYWPIDENNTFDRNHEFYRLLKENVNADIDETRVYFSRVHPGGIPNHWDFENFTKLQFPVICDEENNDWSKSPVIFIDQFDQVVEKVEHTNNTPIIYSANYMHGTIKSLDNKNDRITFVVDIKYWFARVRSKYNKGTLFTNNKAFWSMA*