Scaffold Ga0071351

Basic Information
Taxon OID	3300005044 Open in IMG/M
Scaffold ID	Ga0071351_1021731 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2335
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2335

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.236	Alt. (m)	Depth (m)	2.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.236

Alt. (m)

Depth (m)

2.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017597	Metagenome / Metatranscriptome	239	N
F019778	Metagenome / Metatranscriptome	227	N
F022147	Metagenome / Metatranscriptome	215	N
F024477	Metagenome / Metatranscriptome	205	Y
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071351_10217312	F022147	N/A	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEETYNVSQYILVNYFKIDDLIKKESYPLQEVMTFHNKKCRIQKSKDIVTLEKVAIANKLLIKTLSEEIRNALKEQLTLVSKVGSTFTNLSLMYTYIENNDSSLQSEAKSRQWSNEYQET*
Ga0071351_10217313	F037570	AGTAGG	MNIKKLDLLKIRNLKFRASQRQVVIDRLLRKKDLERDLWKVSIKTLIILAKIKFRCEELERISENLQQTVINGY*
Ga0071351_10217314	F039941	N/A	MDIETLALRLEEIKLSRIEVLKEKKVLAEELLDGKLRIGLKRSIMENMSLLIQLDFTLNEAEVLYENLIECRLLHARYRQQSS*
Ga0071351_10217315	F024477	N/A	MSYDIIKNSSKASSFELLIKSITLIEKVEDFYKEMDQITSYRFKCHGKPDPDIYYMKDIIKIRLMELEKLQMQRINELINLSR*
Ga0071351_10217316	F017597	N/A	MKKSFRSEKLLIELAITRKESIKTTKSSKSTLIKTEMITRILIAALKAKQVIAIRFQVNQTNNLQIWGQDPNILSA*
Ga0071351_10217317	F019778	N/A	MSSNVASQAELIFLYIGESRLIKRISNDILLVLHEDTRSTNTIKLKELLQFKIRGRLSYLNHLAMSTVKEEAKYASALYTQLDSLLAILNTDDKVTAIKLITKICSAYRASKETVQSTAQTSNNIEKMEIG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0071351_1021731

Overview

Ecosystem & Geography

Associated Families

Sequences