Scaffold Ga0071351_1015615

Overview

Basic Information

• Taxon OID: 3300005044
• Scaffold ID: Ga0071351_1015615
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1788
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 2.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038078	Metagenome / Metatranscriptome	166	N
F039102	Metagenome / Metatranscriptome	164	N
F045533	Metagenome / Metatranscriptome	152	N
F045559	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071351_10156151	F039102	N/A	KETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRVLSLLDGIDTRENPNVHNNQELYLKLFHETKMVRKTNQSWRLNVPKLVEFMTEISKVTHSDKVEPMETEEVPKPSISN*
Ga0071351_10156152	F045559	N/A	MDLTFENIKQTTQASELRKDVAKENYKYVKLTGISNVINSLHSTDFSNEPLMHDRMNRIHVLKWKIKDVDPGWHLTDQVALMEHQILDLLDGIDHMKPWNEVGNKLKYMALFSIIENLRKLHPRWGIHLESLETPEKNHWCKCYKCYEARMQKYKIVIQDNPETEGLDESS*
Ga0071351_10156153	F045533	N/A	MAEKPEDNILSSDQRPANEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNEEWNHEDNIKLFTEVRRNMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK*
Ga0071351_10156154	F038078	N/A	MAAKDEKCTVEMKKSKRESIERLFSLINFIFFMSEKEDITLLRYLHEAKAKVLANSEYWSLVDYIGMTIGGIFRCIDTIDVEQKWDSENNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYSTTCPCSQCSTEEDREDTISS