Scaffold Ga0071351_1012339

Overview

Basic Information

• Taxon OID: 3300005044
• Scaffold ID: Ga0071351_1012339
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2126
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 2.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001522	Metagenome / Metatranscriptome	678	N
F006051	Metagenome / Metatranscriptome	382	Y
F037571	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071351_10123391	F001522	AGGA	MSRQIIVGNQGRAHQVGAYQGSFRGRERIAYQDLPTFHEIEQVLEQLTANITLKTEDIPRRPITLPPAFTELSEIETYTEMARLDLQYDDLHTDKPRTAALARLCKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRETIKDASGKTGHMIIPELNHLNNCMCASDCLSNNQESLHFLRICAPRSLRQQYV
Ga0071351_10123392	F006051	GAG	MGRFADIIRCHILEEYMASYMRERGADAMLVLRNESKWALTGNYYDIFPTKISV*
Ga0071351_10123393	F037571	N/A	VEVKEDCIFIRLRKEVCGDKGSDKEVPSSVPVPVVEEVPVVGSEVADSLEAIPEDLVFESGDAFSLERVDNIPMEELFSGSQCDGSVISSGVAS*