Scaffold Ga0071351

Basic Information
Taxon OID	3300005044 Open in IMG/M
Scaffold ID	Ga0071351_1009827 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2490
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2490

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.236	Alt. (m)	Depth (m)	2.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.236

Alt. (m)

Depth (m)

2.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031758	Metagenome / Metatranscriptome	181	N
F040464	Metagenome / Metatranscriptome	161	N
F043229	Metagenome / Metatranscriptome	156	N
F096608	Metagenome / Metatranscriptome	104	N
F105037	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071351_10098272	F031758	N/A	MSVNKSQEKELLIQNLFKLINEIFVVKPGVTFDGIILQVRDTKKRILEIDPNWKLGSKHFHYVHEVISLIDGVNALDEMNLEKQRKPFRKILKTTKALRQTDQLWRMNPRIILEFLKWNSKTIMSAEQVSRKPREQVPLN*
Ga0071351_10098273	F043229	N/A	MTQKGVKLEIETTEECGCEPHECYCRHNKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILVDEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIDLCQTINKLKIIHPDWEMDLEDSKNHHLCRCRSCLEKERCISRH*
Ga0071351_10098274	F096608	GAG	MNPKTELVKEILQIIDTLTPMEIKIIPESVVLKLYQLKKRVKELDPSWEFNDPYNHYIFRILILLDALEVDETFSLEKHGKICQMMHREVRDIRRINSLWRMNTSLVVEFINSTPLKEEEREREKDKLSENLVDKEGSSPFKKH*
Ga0071351_10098275	F040464	N/A	MDKKTRSYKNKVYTFKYKTANPMVSLEWLRRGYAFVGQTQEHLRDILKELTLKMRTMTDKEIEKDLRKGLKVTGDITLELSRFVRQGLEQKRTFKGLLGTLIETKNWALIKLILEVTEELKERSSSSSLLFSIAKEILRELQRIQAIIPIKELKQMETSLINIQYWKLTRHLRI*
Ga0071351_10098276	F105037	N/A	TGAEDEEMVTSHLFHERDLALRGVTLILATIRDNTTLEENLGGYKELHKYIQILKKLDPKWKLVLYYIGNCIRLKHYSCDCHSFL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0071351_1009827

Overview

Ecosystem & Geography

Associated Families

Sequences