Scaffold Ga0071351_1009029

Overview

Basic Information

• Taxon OID: 3300005044
• Scaffold ID: Ga0071351_1009029
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2640
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 2.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054566	Metagenome / Metatranscriptome	139	N
F055421	Metagenome / Metatranscriptome	138	N
F055422	Metagenome / Metatranscriptome	138	N
F062460	Metagenome / Metatranscriptome	130	N
F093242	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071351_10090292	F093242	N/A	MESSNPEKDKIIDIIQDIMNRIDTNTNYNNNYENFLRMYAAIRKLKTREPGLRFKVSNIPTSENNYFFRKRNEN*
Ga0071351_10090294	F062460	N/A	MNLEKSIIEAVTTAVREIRQESCIEKQVKSLMKIYDAIVVKDKEISIKSSLKTTRKRKRSISHE*
Ga0071351_10090295	F055422	N/A	MNNWRFRRRTFPLTRREAHSRVEAIPIANIDILLRSIIDVMNEIRPIDDFDAILATRLYYAVMCLKRFFPGWGISMQPHHLRNANPTNRNRNPPDMNRDPSDTDNYSETEPLITEV*
Ga0071351_10090297	F055421	GGA	MNMEEFTNPYKETNIEVHLMWIAIATTANYIPMEGIVGKCVRSYLALVVWLLIILNRKRSLWQRGAILIIYLKLNSMAKIIENLSYSVTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPSGEEIESNLIKLTMGY*
Ga0071351_10090298	F054566	N/A	MEKGKNKAEITLDKLRLLRVKNTQEKQAISYIILEEDIEPILRQSLVCNVRLLETIDHLLGLLEGIGTIITKEKPIKVKQTNKDAN*