NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071100_1109579

Scaffold Ga0071100_1109579


Overview

Basic Information
Taxon OID3300005043 Open in IMG/M
Scaffold IDGa0071100_1109579 Open in IMG/M
Source Dataset NameMid-Atlantic Ridge North Pond Expedition - Sample 1382A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Marine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)626
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine Subseafloor Aquifer → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location
Location NameNorth Pond, Atlantic Ocean
CoordinatesLat. (o)22.78Long. (o)-46.09Alt. (m)Depth (m)90 to 210
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000935Metagenome / Metatranscriptome828Y

Sequences

Protein IDFamilyRBSSequence
Ga0071100_11095791F000935N/AALLLVGAISSTEAIVSENQEKLYNLMQLQGADCPEPLEISEDELHYQLGEFSRNFQMEHWNNAMKINAGLGKTGHNPRFAVTTKELYDKSFSFPKVRNYNYAVENMNELEHYEDNLNNNISNSQHLKKFIEVAKKVRANLNDKYDIGFIDPGVEGDW*

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