Scaffold Ga0068518_1001794

Overview

Basic Information

• Taxon OID: 3300005002
• Scaffold ID: Ga0068518_1001794
• Source Dataset Name: Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3379
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: Nanji, South Korea
• Coordinates
  • Lat. (^o): 37.3132
  • Long. (^o): 126.828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025488	Metagenome / Metatranscriptome	201	N
F040068	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068518_10017941	F040068	AGGA	MARSVPKCKRAAYVYDRDFIVVDDISGVLKMRSECAIDGYGFLSSQGDIRNPQETPPIIREQMAAWPNPRPIGQPVFTPSPDYQYFIFNYFIVSVQSRATTFDATATVGLNAPIASMDWYVDDVYVVSGLVPTVAMSGGVHTISVLITDDYGNQQTFSFQYEQGVDLGFNFITGEYFYFIDDVQFDFIG*
Ga0068518_10017945	F025488	GAGG	MAYVSRGFIPQTSLASNLGFTRPMYIPAGNATATALYDIVKVSTSGSTADTAGVPAGLMGCVRVDGKDDVPCGVIVGFIADPDYLNQTYRSASTARVALVNYDPQVVLEAQEDDNGTTLAVARIGTPVDLVPGSVDTTTGTSGMQISSATLAGSPGMFRLQQRSFRVDNAAIAGTNTKWLVTFNVHQFKATA*