NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072332_192225

Scaffold Ga0072332_192225


Overview

Basic Information
Taxon OID3300004955 Open in IMG/M
Scaffold IDGa0072332_192225 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 78 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)546
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016975Metagenome / Metatranscriptome243Y
F026580Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0072332_1922251F016975AGAAGVSWPGSQAGGATTSRSELKSLIEIQRREALDGPVTRPKTPLAVENGVGKPAAPARVRA*
Ga0072332_1922252F026580N/AERIAVTQRVSGCYCASARADDSGGRRKAVSQTKDAERRDKVSIRSGKDTRARQAP*

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