NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068513_1018477

Scaffold Ga0068513_1018477


Overview

Basic Information
Taxon OID3300004951 Open in IMG/M
Scaffold IDGa0068513_1018477 Open in IMG/M
Source Dataset NameMarine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameEast Sea, Korea
CoordinatesLat. (o)37.0Long. (o)131.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F039704Metagenome / Metatranscriptome163Y
F063773Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0068513_10184771F063773AGGTGGMGQEFIIKSQKLEDKVNQLLPSQGGFAAGVDLSASTTVIPIVDLTETAE
Ga0068513_10184772F000613AGGAGMPLVKKRLSVAAGATSDQVLAGTTYEYVDPGTRIVVASAVDTAGSATADTTMDFTVNNAEFAKNASVSALVTGEPFGWNGNYVMNYMVTTGQVRNRPIITFTNGTAATRTIDVAVFIGG*
Ga0068513_10184773F039704N/AADMLGIDQNTLVMILLKRFRNDGPVVTKAALRKTKQTIRRLHGMQDVLKSITPTATMRRRAPIKRASTTTLIKN*
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