Scaffold Ga0068513_1010547

Overview

Basic Information

• Taxon OID: 3300004951
• Scaffold ID: Ga0068513_1010547
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 974
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F063773	Metagenome / Metatranscriptome	129	Y
F087220	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068513_10105471	F087220	N/A	TVTNIGAQESQASGSIQAGAGALVPSLLQGARSLLKTPQGQLALGGGAGLVAGMFGDGQKGMRITRKMKSQARMVLNMTGGNLQAAADILGIDQNTLVMILLKRFRNDGPVVTKAALRKTKQTVRRLKSMCDMYDSLRPTATRRRTPMKRASTTTLIKN*
Ga0068513_10105472	F000613	AGGAG	MPLVKKKLSIAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTAGTASADTTMDFTVNNAEFSKDASVSTLVTGEPFGWNGNYVMNDMVTTGQVRNRPVITFTNGTAATRTVDVAVFIGG*
Ga0068513_10105473	F063773	AGGTGG	MGQEFIIKSQNLEDKINQLLPSQGGYGASVDLSASTTVIPI