Scaffold Ga0068513_1008988

Overview

Basic Information

• Taxon OID: 3300004951
• Scaffold ID: Ga0068513_1008988
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1052
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F049294	Metagenome / Metatranscriptome	147	Y
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068513_10089881	F090244	N/A	VEARIFEKLDKIEDRLNDLCVRITSMENEYNSHISDMEKKQANKLRRRDYILAIMAIGLTVIEVCRTLGVI*
Ga0068513_10089882	F049294	AGCAG	MAGNLRYYGLGAYTGLVALWTGMGQIPLDQNTAIALLAPVAILIGADYAKHKNDNSE*
Ga0068513_10089883	F037175	N/A	MINFHTNDINKGFVKSTVWNTLAHLKVYNIGRWLQKWDIHIWDLKDTNPQFFEHINTTSGQKINPDMPSGVTGKFRIDLYLHDSRNIFKLRENSDRIQHEICHALLIGTPHFVSGVHDNVNNRFTVNYWYWDRFKYTKFTLSIIDIRQYL*