Scaffold Ga0068513_1000743

Overview

Basic Information

• Taxon OID: 3300004951
• Scaffold ID: Ga0068513_1000743
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3300
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020811	Metagenome	222	Y
F027819	Metagenome	193	Y
F058537	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068513_100074310	F020811	GAGG	MPIIAIPKDIEFRKVTPTQQKSLEKIMSDSKNNTLRAVAIPTIALTSLAIVGATAFLFRDQLKTFVDENIDNLGEAVTEKVKGVVTGAGDIVSDTIVTIVGRDEPRTPEFTPSGLGPIPRCQRWESDYVTTIKDDPSPTEIVLLALAQKNIIKNMKREKCDRPSSIP
Ga0068513_10007433	F027819	N/A	MSDPKYNFGSPSKMKGLVAGEKATLRFLDLPEKIDTEWGVKYTVSILLLSHPGYPSLSSSGMKMQWQTGATVMVKNIVPLLEEQNKEFLKDYKDLTWELEAMDDGSLWLTNA*
Ga0068513_10007439	F058537	AGG	MALAELFLALQLLDGVKQQDGIAPSDTQEPQDRFVEGAKDFIAGLRDKWPPKRK*