Scaffold Ga0068513_1000024

Overview

Basic Information

• Taxon OID: 3300004951
• Scaffold ID: Ga0068513_1000024
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12218
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y
F023365	Metagenome	210	Y
F086311	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068513_10000245	F086311	GGAG	MANGTEITIQSEDVGTIIKGTAKSRSGDTDTVIDLNDVTAITVYLRDPDGELSNHTATATNVDGGTDGIWSFTTSSAIFSRNPGIWYIQAKYALANSTVFYSNIKTLSVGETLL*
Ga0068513_10000246	F015345	N/A	LTTVDLFAIKQRVVEILKSDTTNLWDSTPNDRTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANVSQVAIVENNVNLGQEYDIRLKLLFVVEAKDGQKTEEDIDDFTKSIIEKLENNYDLRAVGGAEATRLAEASHVTQVMDLPTMFRGDRVKGRVLKFRVIVRT*
Ga0068513_10000248	F023365	N/A	MANLGEITEIVNASELTLEVGADNYILLSNLSLHIGRTESRDVVTSGDPLYSYGSGDNYFTATLLVSTPELSTLNTLGQIDSDGDMTSTAWKIVAKNVSGATKTFEATGVLRDYDISKPSEGKVTIDIFVRITGDTISIT*