Scaffold Ga0068514_1018700

Overview

Basic Information

• Taxon OID: 3300004941
• Scaffold ID: Ga0068514_1018700
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 766
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009521	Metagenome / Metatranscriptome	316	Y
F044193	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068514_10187003	F009521	AGGTGG	MKYQIIINNGSLKGFLAFRGSCLATMQDKYKRLEQQGHKLKLIRGE*
Ga0068514_10187004	F044193	GAGG	MIIKEYQKEYKDYFMFITVYHSLIEVSVHSYVDDDFEYRNRYIDYSVDEIYESICYRIDNNDLLEVA*