Scaffold Ga0068514_1000179

Overview

Basic Information

• Taxon OID: 3300004941
• Scaffold ID: Ga0068514_1000179
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8695
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005816	Metagenome / Metatranscriptome	389	N
F010392	Metagenome / Metatranscriptome	304	Y
F022856	Metagenome	212	Y
F035770	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068514_100017911	F022856	GGA	MSVGNFRDILGKERDKLYPQMPNTRVGDAHISIHIHMYKRANPLRGFDSLGGSARTL*
Ga0068514_100017915	F005816	AGGAG	MDLTNFNVDASNEGKSVVEPGRHVLHWQGEEEELIEGRNGWRGCKMYFEVDGAGIRLNHTFTVGHDNPKYVDSGVKSMLLMAQAMGLKEPPKDTSTAFMGKSVSAELIKDENGYLKINEDWGRTWQATNVKPEPVNDNIQTGPSESDLAAMGTTTVDDDDDAPF*
Ga0068514_100017918	F010392	N/A	MVKENKTETVEEPTIKFADDGKEHKISEMPDEAKQLMARWQEKKQIRDEFIIKANNDIDDLNTLLSAYEARMKNIVEPADEPKIEVQ*
Ga0068514_10001798	F035770	GAGG	MKKYKPITYAMAEYQYVCHLRDNGHTSEIIYPNKDTSKQHTDGSWLLLTITGERLGTVSPNGTVRLT*