NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068517_1005564

Scaffold Ga0068517_1005564


Overview

Basic Information
Taxon OID3300004901 Open in IMG/M
Scaffold IDGa0068517_1005564 Open in IMG/M
Source Dataset NameWastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1418
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameNanji, South Korea
CoordinatesLat. (o)37.3132Long. (o)126.828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090293Metagenome / Metatranscriptome108N
F098942Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0068517_10055641F090293AGGAGMSERTPTAKRSIAPVTVTVEITATRINENGTLSGITARVVKQPIKGNEFKTSVPPMAGGAIYLKALSLEGLSIVADGAPKTTTAKVKLF*
Ga0068517_10055642F098942AGGAGMSAYVKGERKRRKQENLNFVVKWIEGDSIYFRWYKRDRYAVQFQQELIDDGIPPENIRIQMK*

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