NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071103_129664

Scaffold Ga0071103_129664


Overview

Basic Information
Taxon OID3300004870 Open in IMG/M
Scaffold IDGa0071103_129664 Open in IMG/M
Source Dataset NameMid-Atlantic Ridge North Pond Expedition - Sample Bottom Water CTD 2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Marine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location
Location NameNorth Pond, Atlantic Ocean
CoordinatesLat. (o)22.78Long. (o)-46.09Alt. (m)Depth (m)4350
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F032307Metagenome / Metatranscriptome180N
F036732Metagenome169N

Sequences

Protein IDFamilyRBSSequence
Ga0071103_1296641F032307AGGLVVQKLLLQEGLRQTKKYSVSVLGYDFIGLGMRLGIFLTVGVLIQAYMTATIAGGNWLNTVAGFFNIKFPDTLPEWLTKLFTT
Ga0071103_1296642F000730AGGMVSEFIPPEIVPIVWFACISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLISNAPRILHEIDKQIAEQKAAGVDDTQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI*
Ga0071103_1296643F036732N/AAPVAPLLKTAVMKQFFESGISLHLHPDLSHADGVYKYKKSRISSLGQGA*

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