Scaffold Ga0071103_129664

Overview

Basic Information

• Taxon OID: 3300004870
• Scaffold ID: Ga0071103_129664
• Source Dataset Name: Mid-Atlantic Ridge North Pond Expedition - Sample Bottom Water CTD 2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 786
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F032307	Metagenome / Metatranscriptome	180	N
F036732	Metagenome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071103_1296641	F032307	AGG	LVVQKLLLQEGLRQTKKYSVSVLGYDFIGLGMRLGIFLTVGVLIQAYMTATIAGGNWLNTVAGFFNIKFPDTLPEWLTKLFTT
Ga0071103_1296642	F000730	AGG	MVSEFIPPEIVPIVWFACISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLISNAPRILHEIDKQIAEQKAAGVDDTQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI*
Ga0071103_1296643	F036732	N/A	APVAPLLKTAVMKQFFESGISLHLHPDLSHADGVYKYKKSRISSLGQGA*