Scaffold Ga0071103_101624

Overview

Basic Information

• Taxon OID: 3300004870
• Scaffold ID: Ga0071103_101624
• Source Dataset Name: Mid-Atlantic Ridge North Pond Expedition - Sample Bottom Water CTD 2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4785
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058539	Metagenome	135	N
F070688	Metagenome	123	N
F095607	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071103_1016242	F058539	GGA	MITRQKTSRKRTFKEIRYDKILTRQQELILESSMALAESLRMEVKSLRQVIFDQDDLQRELGIAPIEVTGQQQNVTSTGEFNAAELIASVAKGLKPDNIPGGRVALDAFQSFILSNKNEVNALGSHYISQAMPKKDVAQNQVINQ*
Ga0071103_1016244	F095607	GGCGG	MPFSIVGFGESEDRSGVPTAISPFAGDTISDVSGDELRISSIQNPAIAWIYTKSDSASYPINDWKLSSPEIAAVPLLGTGGDSVGSDTYFGTQISPVQVDTRLFPSGYGMTNSSPLTCTMENDDESGVAHTASMVLAVVEQGESLMYNDGYARVDYYNRITGFSGNVTVNQWESYSCTSSGLTFNSLPDELVRIVNTRVEMANGTCYRWAFPGGSSSRPGGLVSNSNLSKTPVVNNFPTRSFRAITEHPQIQVVGSTAETILSVEISYQRV*
Ga0071103_1016245	F070688	GAG	MPSVSVGTDPKKIINANRNRTALTINNIDGNTAIFLLDDITSTTATGSVQLTGGQSRNYNITSAQFGNNQDGTPRFSGQRKVTSAHYAVSNSGTNVVHYEEEYN*