NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0069134_147057

Scaffold Ga0069134_147057


Overview

Basic Information
Taxon OID3300004831 Open in IMG/M
Scaffold IDGa0069134_147057 Open in IMG/M
Source Dataset NameMarine surface microbial communities from the North Atlantic Ocean - filtered matter
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)666
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Surface Seawater → Marine Surface Microbial Communities From The North Atlantic Ocean, Enriched With Methanesulfonate

Source Dataset Sampling Location
Location NameLeca da Palmeira, Matosinhos
CoordinatesLat. (o)41.226956Long. (o)-8.720528Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078747Metagenome / Metatranscriptome116Y
F090510Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0069134_1470571F090510N/AKFKSKVIENKKKKLEDDDKHWITSGYEGTEIFVKGSDIHNLLDEDVDEGLFGEDDKDLVNRVQKETGGSVDE*
Ga0069134_1470573F078747AGGAGGMSNNIKPEVTITWGTEKEITKTYIFEDETQKAFFLKGVDESNGWLEYEIVEKGETISYVQSNNPVSRIIP*

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