Scaffold Ga0068515_110407

Overview

Basic Information

• Taxon OID: 3300004829
• Scaffold ID: Ga0068515_110407
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1169
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004688	Metagenome / Metatranscriptome	428	Y
F049999	Metagenome	146	N
F071636	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1104071	F049999	GAG	MKIKKYIVIIEEVNRSQFEVEASSEAAAIDLVEVGEAGDPTDQRAMEFNCLSVKESTK*
Ga0068515_1104073	F004688	AGGA	MIEKYTMPLIHMNGSGEDRLRRQYNDLFCAVSDAQVKLLYDIDFHERDYYPLGELVWSEANLEREEIKEAMTKVYQYAKQHMHYLDYGKEPLPDES*
Ga0068515_1104075	F071636	N/A	MNETPTVKLTGHFNKTFSVRREEDGYKGLEYSFEWDFGKKKTRIPVSTHAAIELADTFRQLGFTQIHPKGYNKFI*