Scaffold Ga0068515_105597

Overview

Basic Information

• Taxon OID: 3300004829
• Scaffold ID: Ga0068515_105597
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1605
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F010915	Metagenome / Metatranscriptome	297	Y
F033034	Metagenome / Metatranscriptome	178	Y
F045702	Metagenome	152	N
F089938	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1055971	F045702	N/A	MTITQTLNRTAGRFTTLVVNKGATNNTYCAQIMNATAKTVRFYDVNADANRVVPTASVVYARSGKVQYRKPRK*
Ga0068515_1055972	F033034	N/A	MTLVKLTKKAQDIVNQIMSADAVDVDHGPVGERIAYGNMNLTGEGLEFNVNIDGDPGEMTISNEALNTANIANGVIVIDSNNVKNNHYGDITITLYKLSKINAV*
Ga0068515_1055973	F010915	GAGG	MKQKLPPHNMVVVHQVGLDIYTLSYVKYVDHDVEQCIKYNLSAEDVAQFLGNN*
Ga0068515_1055974	F089938	N/A	MLNIDQAFTVQEFVRKNRTKRVWEIQDELYSLICILTKTEEEKNNETETAAA*
Ga0068515_1055975	F006546	N/A	ATKGEQYIVEADELTEIYMKEMPYPQFVKVYVVQPPSPRKNFMTMKAGDIIKICNPYYEMAYHSHPGFVPVKE*