Scaffold Ga0068515_104018

Overview

Basic Information

• Taxon OID: 3300004829
• Scaffold ID: Ga0068515_104018
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1889
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062713	Metagenome	130	Y
F070058	Metagenome	123	Y
F100034	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1040181	F062713	N/A	WLGIVPEFFARGVVAARFEGGGISTVADEMNSLYQWGGFDDHWRGDIDDDGVYRAPEDEPLEPFARVDFNGWTMWAYPYSIFGIKDSVGNQRVGRFD*
Ga0068515_1040186	F100034	AGGAG	MSTYLLTSREEVEEHRRRINTIRSAIEYDVVNSPLNTEFEELEVLLHDAVVKLDEIHDKMKEHVYVFDVTITVSRRVNVKARDEDDAEQAAMDFAINELDCSIDWNEDDVQVFRDEDEETTKVYDVEV*
Ga0068515_1040188	F070058	AGGAG	MIDTWYVVQRFNRKTWEWEERDSDGSSYNSTLDNAKYFCDSYIKDGEECRVIREEVVYDPDR*