Scaffold Ga0068515_103496

Overview

Basic Information

• Taxon OID: 3300004829
• Scaffold ID: Ga0068515_103496
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2022
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F007750	Metagenome	345	Y
F021299	Metagenome / Metatranscriptome	219	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1034962	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRIASACDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYLNNDLLTTGSQRNRVLVRFTNDTAATRTIRCGIFIGG*
Ga0068515_1034963	F007750	AGGAGG	MAFLGDFGKFFGLGSSEEVLGQAGAGVGEFFGGPAGAIAGRELGKATGRATSNLAGDDNISPLSTADQAREQSAVPVSVIGNRPQETSTMTGTTGMITQAGFGFLPQIATGVGRFLTSKSGQIATGVGTAVGLGSSQFMGMNGREKPVLTQSRRNKSKVRQLVNFMGIEGTANFLSQSIGQNVSPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRASSTTLIKN*
Ga0068515_1034964	F021299	N/A	KGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPSDKLGG*