NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068515_102086

Scaffold Ga0068515_102086


Overview

Basic Information
Taxon OID3300004829 Open in IMG/M
Scaffold IDGa0068515_102086 Open in IMG/M
Source Dataset NameMarine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2561
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameSouth Korea: Pohang-si, Gyeongsangbuk-do
CoordinatesLat. (o)36.03776Long. (o)129.386Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y
F056586Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0068515_1020861F001655GGAGGVKQPENSHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDEPGMHEHFEAAVRRTAKALAESYTYWPEGYVHVQTIINEEYVNIV*
Ga0068515_1020862F002858AGGAGMLIDEKSIYEVTGGDYSVYCLGYTQARTVTNDIMKRDPWGGIPFVIRKDLEVSFDDKGNVVMPRVVLDKILFLASDELPEGDE*
Ga0068515_1020863F023856GGAGGMRCKACDRILEESELTKKDIHGDFLDLCGICLSATASAGVDTETMQYYQYEVFTDDENYDTLY*
Ga0068515_1020864F024320AGGGGGMTFEEYEQGYYSGDSEDLSGPPEDPETRAMIEHLVEFETEMFRLDCRRRLQGLNRRHLESLLVDLHGEEWRDAL*
Ga0068515_1020867F056586AGGMATMKRTYQVIMTKVYEVKVEAESREQAEEIFDNFADWEELLRVHTLDIEPADYLTLREED*
Ga0068515_1020868F008883AGGAGGMTFGRYTIWYNHEDHVWDIYDSRKGFMYPEYTINNYSRLLCGLRDRLGFLDTDKNHRRFWRVMRWWDKLRHGRR*
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