Scaffold Ga0068515_101118

Overview

Basic Information

• Taxon OID: 3300004829
• Scaffold ID: Ga0068515_101118
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3453
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001227	Metagenome	742	Y
F024528	Metagenome	205	Y
F035271	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1011184	F035271	AGGA	MSYALIPDGYTLKKVTQAQKQALKDKRRHDNVEALIANPEIIKQIIITGAAFLIAKEGKEALQDLKDLGVNVSQDVEDAYTKKRQIGSAPVGVSIEDIVEEGLKRFGLKE*
Ga0068515_1011186	F024528	AGGAGG	MPKKKMTKAQVKRKLKTCTNAMYDMILDKMGHTNSDVPMSLPKLMELHKAMQGAAKRMK*
Ga0068515_1011189	F001227	GGAG	MARRMKKRSTRRKRSFSVNLIETGAGLAFLDAANAGSASQSFLKGDIQGGLKTLGDAFKNNKDKMVRIGAGALAAKLVVSSLGGSKILGAIGPLKLRA*