Scaffold Ga0068515_100389

Overview

Basic Information

• Taxon OID: 3300004829
• Scaffold ID: Ga0068515_100389
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5632
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006939	Metagenome / Metatranscriptome	361	N
F016477	Metagenome	247	N
F039144	Metagenome / Metatranscriptome	164	N
F070007	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1003893	F016477	AGGAG	MENIIKQIRDIESDLQTAVCRAEEYRNDAERGINVNHTCEGDMSWTKQDKINSLFEYLEDAKNDIDRLKDDIKEAKKHLTNLLDDVEYESVRQKAVGES*
Ga0068515_1003895	F039144	AGAAGG	MLFRMNREYFCECCEFYKTFEEMHGDNDTICAVCQEGQEEWEYINSNEEDE*
Ga0068515_1003898	F006939	AGGAG	MALDKTMVSNVIADNLNGFITVKFLTKTDEERVYNGRMNVQKGLKGNERGRIAAEALRSNGYVTLKTSEGYKCFNLDKVLAMKVGGRHIFCMGAEL*
Ga0068515_1003899	F070007	GGAG	MNQDLERELRMLGIMIPTEDEVEVEEDMRSVYLSKDWYNDPRDGNGEVPY*