NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068515_100336

Scaffold Ga0068515_100336


Overview

Basic Information
Taxon OID3300004829 Open in IMG/M
Scaffold IDGa0068515_100336 Open in IMG/M
Source Dataset NameMarine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6271
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameSouth Korea: Pohang-si, Gyeongsangbuk-do
CoordinatesLat. (o)36.03776Long. (o)129.386Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016262Metagenome / Metatranscriptome248Y
F021092Metagenome / Metatranscriptome220N
F023325Metagenome / Metatranscriptome210N
F026511Metagenome / Metatranscriptome197N
F052474Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0068515_1003361F016262N/AMIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLVGSGATGKLISDLAPIAVGLLLQGQSNTFAKEAGKGMIAQAAGSWIKSQVPALGISGDGSAYDASTMMSGLDTGVDNPMIAGDGSYVAPSIGAAYYDDGSEAAY*
Ga0068515_10033610F026511N/AMNTTTEIQYVGEATMITSNCIAIAFNRPTGSNPVNVNGYPLEQGQTLRISQNVGDIDRTQYQIYFGAGAGSDECYVFRTLILEDYHNG*
Ga0068515_1003364F023325AGTAGMRLISPLIEYLTVSKKMKQVGSYEGAYTKSVYLPFASNATVGQQYYFNPDEVLDSANNFITTIEMVDSVTNATCLTTPATDPLSATQAAQGYLYICNTKREILATLPLYTLIRRLQAGKPQYLYFDEPVIWQNCFIQFESLSSPVTTSNSVWLKVSYSPVEK*
Ga0068515_1003365F021092N/AMTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEDGIEKMRKFLSKNTGFHRIKLYSNNDLKTNGVPRQEPQVFEVSITGKEFDPPKEDSAPITGFGVNPSYPSAGGIIGVEQYLNKHEENATLREKIKGLELEIQYLRDQHQREIDRLRADHEAALKAAKDSNQMFSQGLGMLMQRMGVGE*
Ga0068515_1003366F052474N/AMSDKEKILAAINKLAKLDPQLGENLTKLAKLAEEKPFIYKQAIQQLNSL*
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