Scaffold Ga0068515_100078

Overview

Basic Information

• Taxon OID: 3300004829
• Scaffold ID: Ga0068515_100078
• Source Dataset Name: Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15669
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: South Korea: Pohang-si, Gyeongsangbuk-do
• Coordinates
  • Lat. (^o): 36.03776
  • Long. (^o): 129.386

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005819	Metagenome / Metatranscriptome	389	Y
F006971	Metagenome / Metatranscriptome	361	Y
F028777	Metagenome / Metatranscriptome	190	Y
F035554	Metagenome / Metatranscriptome	172	N
F039398	Metagenome / Metatranscriptome	164	N
F050019	Metagenome / Metatranscriptome	146	N
F072865	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1000781	F050019	GGAG	LGIADNIRGFFRSSEIPTEQKNYGKFPTSNIVFPFNTDAGYFSGVNQMSPEGNSAALACLNVLGTAFSEPPLKVYLKNQEGMDHISNHPAEQLISNPNPNMTA
Ga0068515_10007810	F072865	N/A	MKNIIVKYIGVKNYKVSDDATLEEIHDMFQTDLSTVPVAFAKNIVPIAYAEDK*
Ga0068515_10007811	F028777	AGGGGG	MLGIFGRNKPLSTFEIISLEKNISEAKKIRYILEVEGFICSLDPEFSASGNLRKVVHRLNNSYNLSIYKEECNCDNKQKAKLNLDGKPRRHIAYRKDWAS*
Ga0068515_10007812	F035554	AGGAGG	MAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKTATPNKKSLDEKVKDLEAEGLVEDISMKAQAVMDNIKDFALEITNQDLDLARNYTAQALGSMGISKTEVSINNLQSVKNKIQDIATMARTEIDKGE*
Ga0068515_1000783	F005819	N/A	MDYIDDMSLALPNQQQVGESNIDFKRFQYYLGLGASRTLKKVSQNFSLSDRRIYQIAAKNQWTDRVKAINKMLNEQIISEVFAQVGETARDLADNLKPLIFRIINEINERDLASMNPTELKGILDICYKIISQIYGLGQPQVTVNHIEQPQIRFKWDWEQDDEPDY*
Ga0068515_1000785	F006971	GGA	MMYQGIEYKKHQKVKFVIPTDLRIVEPKTKKILWRYGIIKFFAKNTKSAWILENGTKESIKISLFCVLPVN*
Ga0068515_1000786	F039398	GAGG	MEYAADDINIGYMTCLMFINSEKTLVDKLNNITEIYPISLNGIFDNVQDTHQGGVSFELVLKSLPTYVEITMNHNGNFDIYTKTTKGETEFKDEVVETLINLLHIFYVNMVDDENKLLMNALDKHTYRKIAKRMHYRENFGNDVSGD*