NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070913_100054

Scaffold Ga0070913_100054


Overview

Basic Information
Taxon OID3300004822 Open in IMG/M
Scaffold IDGa0070913_100054 Open in IMG/M
Source Dataset NameHypersaline lake viral communities from Bras del Port, Santa Pola, Alicante, Spain - CR30 Febr14 dirigido
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Alicante
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2619
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Hypersaline Lake → Hypersaline Lake Viral Communities From Bras Del Port, Santa Pola, Alicante, Spain

Source Dataset Sampling Location
Location NameBras del Port, Alicante.
CoordinatesLat. (o)38.19317Long. (o)-0.59268Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065465Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0070913_1000542F065465AGGAMSEDITVVCECDATEEARSMGYRRYADMDAAMIVAAWPVHYTEHGSWDSHILPTLRCLAGYGDSGYGTYQQRQDVALIQDGDEADTPADAIILDSGHLLDDIIVSWQDGAHTAVTDTLRQSDEHSLEDIQR*

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