Scaffold Ga0071104_110586

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0071104_110586

Scaffold Ga0071104_110586

Overview

Basic Information
Taxon OID	3300004818 Open in IMG/M
Scaffold ID	Ga0071104_110586 Open in IMG/M
Source Dataset Name	Trench sediment microbial communities from the deep Pacific Ocean
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Macrogen
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2687
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Deep-Sea Sediment → Trench Sediment Microbial Communities From The Deep Pacific Ocean

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	29.0	Long. (^o)	142.0	Alt. (m)		Depth (m)	9800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087249	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071104_1105863	F087249	AGGA	MQDSEEPTTQGMLARMDAYIAAASENIDPSNIDVIDKLSAKFLDTLSPREMGFLMHDDPQPLSLQDVDSEIRKKYKAKYGTKNLKRGQFFRLKSGTITFFTHEHNLKFKVDN*

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