Scaffold Ga0062381_10014529

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0062381_10014529

Scaffold Ga0062381_10014529

Overview

Basic Information
Taxon OID	3300004808 Open in IMG/M
Scaffold ID	Ga0062381_10014529 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1936
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From St. Louis River Estuary, Michigan Under Dissolved Organic Matter Induced Mercury Methylation

Source Dataset Sampling Location
Location Name	USA: Michigan, St. Louis River estuary
Coordinates	Lat. (^o)	46.6972164	Long. (^o)	-92.3279105	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000825	Metagenome / Metatranscriptome	874	Y
F027638	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062381_100145293	F000825	GGAGG	MRKWMVAALTGAALTLAALPAQAQDTWKRYVVKELGISFMAPGDVKAELGTFRGAVAGPRQTMVFKSTANNIEYKVTAMSFLQAQAEGATILGERTYMFQENKTIVTDTFAIVEPGKDAVYGRKMVVDLADDKGRATGAFFFTKGKLITLEATATGSGTQSSDPARFVDSIAFSPARAAGATELQPPKLD*
Ga0062381_100145294	F027638	N/A	NNGGRSTAAFYFLNGRIVSLQATVLPANGDYETPEMGRFIDSITFFTVRADDDAIELPAPPK*

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