Scaffold Ga0007809_10033320

Overview

Basic Information

• Taxon OID: 3300004807
• Scaffold ID: Ga0007809_10033320
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1742
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010759	Metagenome	299	Y
F017591	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007809_100333202	F010759	N/A	MSEFNNYQDKSYLEGPEPEFNQDAFRQDRGGLVTKDNGIADRLLKNDTLYRELKGDWRREGYNKSRNIKITTGREGGKFYIQREQFNTEYIAEQCAEYRKRAEAGYMDPLAPVMPDGKLGYKWMELPESIAIDISDKYFGGMPWAAIKRDRTLKAQFYRVVETEYPAFICYPGGRLPIPLEVPYPVPIGSDKFFAGASFVGKQ*
Ga0007809_100333203	F017591	AGGA	MSSQIADANGLVAFVEDFTGSSNSSEIKECIYLTELMMRNLEIPALRTNPYTTVGIANSSGYVPIPADMNKPILFFNQGPAGTNGGVGPWIVYDRIGDRDMIGEQLIQSLYLTPVNIPQVYRGKFAEVGQNYEFLPALGAGAVINLYYYTTFPELFSLDSNGNPILTNVILQSWPEGYVYGTLHNYYLKRKMADD