Scaffold Ga0007854_10004140

Overview

Basic Information

• Taxon OID: 3300004806
• Scaffold ID: Ga0007854_10004140
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8679
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005296	Metagenome	405	Y
F009261	Metagenome	320	Y
F010891	Metagenome	297	Y
F012316	Metagenome	281	Y
F047435	Metagenome	149	N
F093078	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007854_1000414010	F009261	AGGAG	MVITPSNSGNLVAGAGLGIFAWSAFLKADKIPWLRNLLTTRRKEMTLDWIDKNKGISLLGLETINLGIHGILSANAVIFALGNTAFNIFMLWAYLPFRKMRARKKHVDNVLKGVS*
Ga0007854_1000414011	F047435	AGGAG	MTKLTLLAVLGLIYIGIVRLAYFTISVFFILFFGMSVWELIRTARQPAKHSIAAQ*
Ga0007854_1000414012	F093078	AGGAG	MKLICGFLLFVAAVAITGGLYLTIRKPAQKKTDLEKLENVCQQIFYRIRQLDDYLARIYTTTLFRMIPSLHEERSTVPERRSSAAEFPHDSVVIPAE*
Ga0007854_100041402	F010891	AGGAG	MTTKKQLTPEQIAVLNLMVNGAFSSIAIHALGDRVTKGIHKVADATQYATDKTAYAAGTAQICAIPAAKHVWTSITGLFAKKTAITPASL*
Ga0007854_100041408	F012316	AGGAG	MSTTIIDQPAGPMHRCGKVWEGLHSLGIRGISTVNLLRKRHDLDALERSLARIIETANGHRAKGLPKGSPAYRVLAETADAKIQGFTSKWSVDVATIEAQAPALADLHDLCVPDKQVPAGVKLLVGLLGTILFLVLLGAASGLVHAGHDWVIRLIVR*
Ga0007854_100041409	F005296	GGAG	MATWLFWLLPSYEAGFWSALLAGKLRDHGKTRELLVYGIRSRTHLPLIDERLRKVAGTPTKAQAFLVRHAAAFIRWLTNTRAIEHVLLIGFKRSWPKRRTIDSKVSLYL*