Scaffold Ga0007854_10003655

Overview

Basic Information

• Taxon OID: 3300004806
• Scaffold ID: Ga0007854_10003655
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9306
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046150	Metagenome	151	N
F050093	Metagenome / Metatranscriptome	145	N
F050107	Metagenome	145	N
F050108	Metagenome	145	N
F057847	Metagenome	135	N
F059592	Metagenome	133	N
F066389	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007854_1000365512	F050108	GAGG	MATLAIEQMQFPFMPPPAPLPTELHNLKVNRLEPGQLGNTVRRGDKWANVPRGYDLLLTQGPDHKIVGRGRVEKVWTGPFNEVPATVLDRNHSGSQSYSSVLLAMRDAYGADFSEDEIVVFLDYKRIS*
Ga0007854_1000365516	F050093	GGAG	MTEETTGVLEKELAGVNEQIVRLEKYKTALNAALEARLDLDGFISARPQVYTPQTVTLTALTEGKDSPNARPNSLEMARVVLLNLDGEEKTPDEIRALIKKTYGIGPAKTLDQMLYKRASKGTMFYKTAEGRFGLLSLRATTEEVRTPTTAVA*
Ga0007854_100036552	F057847	AGGAG	MPETLPVFMKGERKPINCFRDAEGFLVIDAVIGDDDLTVVSPDSGEERFRITDGEVTDLRPHEHEWAIDHSLCTVCNKSKQQINEEQDEQTHPTAVQ*
Ga0007854_100036553	F046150	GAGG	MNRPTQPQSSRLRVQAATSAVNAPIECPSCGSIFFIEAQAGMYTTSGAGYRNVNQAPQKVYLCPCGEIMIPSNYSSGVPAGSERDLFVQSLKLAITRRNSTTLDQIAQGTVSLAEHNRLKAQFEELATRFNTWAAGGEVPEPVELATNGEEETPEEEQSPEPAARITMRELGAAPLIATGTRGRSAAAAVQSTGDHKEITSTPATIYTGGARERMKRQGGQ*
Ga0007854_100036554	F059592	AGGGGG	VPKRQLASRSVHVEFLTGLELVSTKIFPLPGGVGRRQNPTAYDPRLTHLSGLTPVGDEVVYYEHIATVRHKATNKFFVAFKETMDAFLARSTDLQKYPEWLMKQPNKQAEREIHIYLVTRTPQSVSIMRSHEDWLAHIADVGTFDTLAYFLAQNNVIDEKALATLR*
Ga0007854_100036556	F066389	AGG	MPPTEDLNLSVGTEITATDVPYGSSYTNRHLYGAHAMGNILSGDLLNPDSAPLAEAFDPRTGTTYHGFRFPGNVVQDPRIPVGTIAMLNSNCHMVLMAPDGRTVECDVRDVMLNVDPARAMSERIALKAGEFGSGTIRGTMQMSPESHKGLMRAFGFTDEPKPVIVPQEDLFEDRTW*
Ga0007854_100036558	F050107	GAGG	MAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRTPFRPLEIQHLVSILEALAPTNSLTKDMKELHESMKHRFINLNLKNRPRLLPTGEWMVTLAWYKADIEEVLTLLLEAKSGKSQTIESLAEQQKEQGKELFEV*