Scaffold Ga0007854_10000026

Overview

Basic Information

• Taxon OID: 3300004806
• Scaffold ID: Ga0007854_10000026
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117202
• Total Scaffold Genes: 150
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (35.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071952	Metagenome	121	N
F080872	Metagenome	114	N
F098672	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007854_10000026144	F080872	N/A	MSGVKIQKVDHVEPEAKRPVHHKSMRTYPRGAMKGTRSRGGGGIVPVKDPARPPPVRKGTLRILTKKGAEARRKTIKKTVSEMNDGVVRASLKKSNININPKTPANIAREILEGGMEAGMIVVK*
Ga0007854_1000002625	F071952	N/A	MFQRMKASYRLSPLARKGSPISDPCQVPQYSGTPGWIYLTHDSNGNAHAYFTNAKGERPESLALVMDERLCCDTIFRVIRLAPKMYVLYDVLVLNGTRIHETLSFADRQAKIAELLELFHFPDLVALMPIANAPVGTHVRGYEQYDSVPGTIGVYLPSVE*
Ga0007854_1000002675	F098672	N/A	MPAKKGGGFLETMVASGVGAYAAKNSSSMKGLLWTLGKYVLVIVVVSFLIMFVLGLMSTEHFVPVTPSKTGDEKLTTSAGNVILH*