Scaffold Ga0007792_10096451

Overview

Basic Information

• Taxon OID: 3300004805
• Scaffold ID: Ga0007792_10096451
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 902
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012867	Metagenome	276	Y
F089828	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007792_100964511	F089828	GAGG	MMQLSEHSRNRLLHTFSLWDVQQEYRGHVYGYLVQGWPPGSFYTAVFANDFAGAMAHSHPSNRIDTLKCLSGWIQSHMPEQARGSYDRVNNWLGMSDDHRRTALEQAKLIYDTKTEVWLI
Ga0007792_100964512	F012867	GGA	MMQDFVYEQQRQSVTEEWGDEISMAILAAKLNIPRVSYRIYYSNDNLTRRIFIFRGNCTPAETETMLGLGFMFAKDHDTENIPDQLIEEEHDATI*