Scaffold Ga0007792_10025042

Overview

Basic Information

• Taxon OID: 3300004805
• Scaffold ID: Ga0007792_10025042
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1811
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Oxalobacter → unclassified Oxalobacter → Oxalobacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006053	Metagenome	382	Y
F023521	Metagenome / Metatranscriptome	209	Y
F094831	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007792_100250421	F023521	N/A	MKDAIIYAGYSRLADGTMKFRTATSEVRVNQLVAFGEEVHMILINGVYSKSAAAKELLRLDHANGARALEQFYTAQVRDENPFKKPTRVVKVTVPNKAMVHLVGARIEVEELSTAEARKVRNEWNRKHAHLSYDGE*
Ga0007792_100250422	F094831	N/A	MPYVPKELRTESFIAGFADIYTMLADNPEMRMIPIDQLELVRPKLKQLGYRFRVVFRGPHRRNRGTLKTNARAFNVYFKGT*
Ga0007792_100250427	F006053	AGGAG	MKVKKLILRLNRAEVEHNVDKVKKFWLKLLKKSLKHKHTEAVK*