Scaffold Ga0007796_10013057

Overview

Basic Information

• Taxon OID: 3300004804
• Scaffold ID: Ga0007796_10013057
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3101
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019444	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007796_100130573	F019444	N/A	MSNILCHLGDPRSAKPASLAEYGKLRERMIQRPWVSLSETDFVRAVTEQGCPFYGALMNGHDLMELQFEKLVWRTQQLAGLDFDVCEISADNMRKHFQYLGLQPWLVYPTFSNGIVPNRQSYRLLWRTECDLNLTYEECSAALKKLRSLSNDLADKHAVNPTRMFQGSNAGFFHYDAHAKRLNLKQLAA*