Scaffold Ga0007801

Basic Information
Taxon OID	3300004802 Open in IMG/M
Scaffold ID	Ga0007801_10019315 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004802 Open in IMG/M

Scaffold ID

Ga0007801_10019315 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2087
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2087

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F018323	Metagenome / Metatranscriptome	235	N
F050893	Metagenome / Metatranscriptome	144	Y
F055419	Metagenome / Metatranscriptome	138	N
F085117	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007801_100193151	F085117	N/A	VDKSQEIARCRKSISETTILLREKTQLLTVLFNKLTVSERNLIGEELMEVFGNSMKMIHDISRNLEIPVKTSVAKVLFTD*
Ga0007801_100193152	F050893	N/A	MEEIRTTINEIEDLATLLLAQKESLEEREEVDPSKESIHKTLLAVKQLNKKLEAILDNEKLRTTEELKKGVCEKE*
Ga0007801_100193153	F055419	N/A	MTETLAPHERLALYNLTDEEIEKIEEELVKHFPREEFAEIHIEVWRTYEETGALQIHKLIEAKYPGNSRAGQRAITWFKIAKVLPHRVHRNAQQ*
Ga0007801_100193154	F018323	GAG	MRNNKYNDEVVELIESLEENSVDLTSAMDTVRVLDELGLPLFEHILINQICKDLNAITTEINHDQEDERVFRKIFHKVRVLKLRNPTWKFKQRAKKSTYSKRRMIEEERLTLSQEEARELVKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRTWLSFYRFPDLRKITIYNEKNFLCKVEGIRRKYSRLKWSIVL*
Ga0007801_100193156	F011134	N/A	MSTFAKSEENYDSKETLVDTIKTDLVSQFKMCVDDINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRVEDPGWSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007801_10019315

Overview

Ecosystem & Geography

Associated Families

Sequences