Scaffold Ga0058860_11546948

Overview

Basic Information

• Taxon OID: 3300004801
• Scaffold ID: Ga0058860_11546948
• Source Dataset Name: Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1195
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Switchgrass Rhizosphere And Bulk Soil Microbial Communities From Kellogg Biological Station, Michigan, Usa For Expression Studies

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3912
  • Long. (^o): -85.383786

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019617	Metagenome / Metatranscriptome	228	Y
F037481	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058860_115469482	F037481	GGAG	VQQKVIALPALRIAAATTELVKGVLALYPQASIIPRLTPLEDEDISVEVQLPVTLEELYRARDQIHELVIQLQERYDVLILASAVPQNHPSC*
Ga0058860_115469483	F019617	N/A	LSMLERGRQFSYAGTMNPPTSEVLSTNVLPRMVQRVLVDGWEIEQAVEEAHKQATEIFARHQTRAG*