Scaffold Ga0058863_11965738

Overview

Basic Information

• Taxon OID: 3300004799
• Scaffold ID: Ga0058863_11965738
• Source Dataset Name: Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1729
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Switchgrass Rhizosphere And Bulk Soil Microbial Communities From Kellogg Biological Station, Michigan, Usa For Expression Studies

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3912
  • Long. (^o): -85.383786

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023966	Metagenome / Metatranscriptome	208	Y
F042033	Metagenome / Metatranscriptome	159	Y
F044745	Metagenome / Metatranscriptome	154	Y
F061313	Metagenome / Metatranscriptome	132	Y
F081702	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058863_119657381	F023966	AGGAGG	MDPNNRVLSRMGARELTEQEVDAVQGAFVRHTLTPCFIDKKQQLLNGDQSIGECG*
Ga0058863_119657382	F061313	AGGAG	MNDHNRVLVRRGARDLTEKEVEQVCGGLRTATKCSVTAAGAIDGDLHECS*
Ga0058863_119657383	F044745	GGA	MNDQNRVLIRKGARDLNEQEVAMVSGGLRTLTACTLAAAGTLDGDTFHSECGSPDQ*
Ga0058863_119657385	F042033	GGA	MKGRKNMDDQNRVLIRRGARSLNQEEIERVGGGISTTTLCTVPSTTCPNKDGDASIGECGHGC*
Ga0058863_119657386	F081702	AGGAG	MDDQTRVLLRQGSRELSQGEVEQVGGGFNTLSITFGPNGRDGDGSLGES*