Scaffold Ga0007763_10745696

Overview

Basic Information

• Taxon OID: 3300004796
• Scaffold ID: Ga0007763_10745696
• Source Dataset Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1271
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F062746	Metagenome / Metatranscriptome	130	Y
F084239	Metagenome / Metatranscriptome	112	N
F092053	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007763_107456961	F000263	AGG	VTPEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIGARTL*
Ga0007763_107456962	F092053	AGG	MKLSSEVKEDLQDQADQIIYFEAAMSNEDKASKAVYDRLVEIYKVAFKEGAKK*
Ga0007763_107456963	F084239	N/A	MEYLKIHLISLEQDLEQIDYVNAHHFYRVKQAEIENTRHILSVATDIMNSTNERVYG*
Ga0007763_107456964	F062746	AGAAG	MTNAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFD*