Scaffold Ga0007756_11640460

Overview

Basic Information

• Taxon OID: 3300004795
• Scaffold ID: Ga0007756_11640460
• Source Dataset Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2087
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019468	Metagenome / Metatranscriptome	229	N
F027823	Metagenome / Metatranscriptome	193	Y
F038644	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007756_116404601	F027823	N/A	MNITAAKDVPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRGVYDDYDGYYYAYEKDIGTGIMFDPWLREFKVNMTISDGVYKTKMYHTTVESNPILLVLYKK
Ga0007756_116404602	F038644	N/A	MRTIKITQLPNGPWRECALEAQRRGIELVSDCNLSGTDITLIGAIDMIRELTEKIEKKTE
Ga0007756_116404604	F019468	N/A	MTIEKTYKLSIKDTAYFLTEEEVTKLYEQCRKALNIDNTYFPNYPPGVRKFDDDKTTPLNPTTPSIPYPYDTYPWYTPTYPSGPNYPYWTSPNTTTTCGTINAGEGNCVMDTNWQPNLCNTVKSSNDINFISDDMAVHEDNQKWRSSVEQALDKLNANKKV*