NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007756_11640460

Scaffold Ga0007756_11640460


Overview

Basic Information
Taxon OID3300004795 Open in IMG/M
Scaffold IDGa0007756_11640460 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2087
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019468Metagenome / Metatranscriptome229N
F027823Metagenome / Metatranscriptome193Y
F038644Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0007756_116404601F027823N/AMNITAAKDVPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRGVYDDYDGYYYAYEKDIGTGIMFDPWLREFKVNMTISDGVYKTKMYHTTVESNPILLVLYKK
Ga0007756_116404602F038644N/AMRTIKITQLPNGPWRECALEAQRRGIELVSDCNLSGTDITLIGAIDMIRELTEKIEKKTE
Ga0007756_116404604F019468N/AMTIEKTYKLSIKDTAYFLTEEEVTKLYEQCRKALNIDNTYFPNYPPGVRKFDDDKTTPLNPTTPSIPYPYDTYPWYTPTYPSGPNYPYWTSPNTTTTCGTINAGEGNCVMDTNWQPNLCNTVKSSNDINFISDDMAVHEDNQKWRSSVEQALDKLNANKKV*

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