Scaffold Ga0007761_10050135

Overview

Basic Information

• Taxon OID: 3300004792
• Scaffold ID: Ga0007761_10050135
• Source Dataset Name: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3029
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F053990	Metagenome / Metatranscriptome	140	Y
F073458	Metagenome / Metatranscriptome	120	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007761_100501351	F013631	N/A	MITDVFHYTTSRWDWQSGDVNQMWIQEIEEAPDCYRYIAVAYNPRKDTSMVMSNPRGYFDTLNWVRNFCGSFSILPN*
Ga0007761_100501356	F093764	N/A	MARRCKSVSREIVENLQETLVEYFRDSILDDCDYEGMTGSDLLEALVGTFRELESDIQEQLKPIQYVLDKLDPENDVVTTAR*
Ga0007761_100501357	F073458	N/A	MSAKLIALATELVDTNPAGAQLIVNLTNAETGAELAEALDNYDSTVLENYTQAVDDGDVTLTGADGVVVTL*
Ga0007761_100501358	F053990	N/A	SSSQGGYEMIDTCVLHDDYEDFAQKFLGVDYDDYIGLQLGLPDEDEIEIEYSLSF*