Scaffold Ga0068459_102869

Overview

Basic Information

• Taxon OID: 3300004791
• Scaffold ID: Ga0068459_102869
• Source Dataset Name: Porphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: HudsonAlpha Institute for Biotechnology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8462
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis → Porphyra Umbilicalis Symbiont Microbial Communities From The Coast Of Maine, Usa, In Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Trenton, Maine, United States
• Coordinates
  • Lat. (^o): 44.4
  • Long. (^o): -68.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013269	Metagenome	272	Y
F024709	Metagenome	204	Y
F048070	Metagenome	148	Y
F100271	Metagenome	102	Y
F104363	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068459_10286912	F100271	N/A	MAVARGLAIVKFDEPFLVKLCRFRKDQVIVRKNATLGFAEPYQGPMLSAVLDNNNAKDETDTSSDDASGDPLEDLDFSKAPEYLHKQIRDMLKTHSSM*
Ga0068459_1028693	F024709	GGCGG	VAHAWVDQLTGLRRPVEQADGPGVKWAFAIIGKAVPCAVDGEANNERFSQHLDAFEPEQVAAPTRFNAQSVLGRRAHADGGPPGGAPPSARNTRARSLSHESGPSVGSRHTCRRDSRRSDEQDE*
Ga0068459_1028694	F048070	AGG	MAQGVGFVSLASVDKSASYSKHARIAVAYQLLLVHCGMATVPASVVVTKRRRTESKCCTGGGRNPLGSTGTEGSLPISVAGADFGREYVYGP*
Ga0068459_1028695	F104363	GAGG	MDKSVTSNMDMLDSGYPRGIRDNVGHGCEHGLSATSSRWRLPFLPWYVLVLLPEKAHHQVACEIFQGFPGVVVRPVVEPAHLSAIAVASLA*
Ga0068459_1028696	F013269	AGCAGG	VSVVVGRVAEVNVDMVFLAVNVNDKCGGIRVCVDDHEGFNGFALQLVLPIVVCRVYIVADLDVRIAGFDPMVELTIVTLLRLTQGLDYDGDLLAQAGHELAFLS*