Scaffold Ga0007827_10048730

Overview

Basic Information

• Taxon OID: 3300004777
• Scaffold ID: Ga0007827_10048730
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 987
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055458	Metagenome / Metatranscriptome	138	N
F088320	Metagenome / Metatranscriptome	109	N
F100445	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007827_100487301	F100445	N/A	MTPIISEAQAKLIPLAFDLNNRIWMEGYVLCCSFLENAAQILQIQIMDGQGFETMTEYDVELNTHINQVLNILNKEQSITPDMTVWVMSLLNHMLYLKNIVFNPDPNDLIKFIKPLQIIKLNIKESRVLMEGALTWVDKKMMMQ*
Ga0007827_100487302	F088320	AGAAG	MSQVSENRRRELEDSKRKLAESVMMINGLLSLLEGHKRMLSERNQADPSNGKISVAKEAVKVMADKIKEVLDLNELRLEEISLHNNDTNNQ*
Ga0007827_100487303	F055458	N/A	RSLKMSISLTDIVNKTMTTFIKGSMCEILALISAQLKEIVKELDKFPLAKRILVENEVDDANDKIIELLVELETTFLVETAEEES*